R 配色

virids调色板

安装和加载，及测试代码

install.packages("viridis")
library(viridis)

library(ggplot2)
ggplot(data.frame(x = rnorm(10000), y = rnorm(10000)), aes(x = x, y = y)) +
  geom_hex() + coord_fixed() +
  scale_fill_viridis() + theme_bw()

热图调色

seed(1234)
matrix <-  matrix(rnorm(100), 20, 10)
matrix[1:10, seq(1, 10, 2)]   <- matrix[1:10, seq(1, 10, 2)] + 3
matrix[11:20, seq(2, 10, 2)] <- matrix[11:20, seq(2, 10, 2)] + 2
matrix[15:20, seq(2, 10, 2)] <- matrix[15:20, seq(2, 10, 2)] + 4
colnames(matrix)  <- paste("Test", 1:10, sep = "")
rownames(matrix) <- paste("Gene", 1:20, sep = "")

# default
pheatmap(matrix)
# viridis
pheatmap(test, color = viridis(7))

viridis提供的配色方案

avatar

RColorBrewer

col = RColorBrewer::brewer.pal(name = "Blues", n = 9)
col
[1] "#F7FBFF" "#DEEBF7" "#C6DBEF" "#9ECAE1" "#6BAED6" "#4292C6" "#2171B5"
[8] "#08519C" "#08306B"

setNames(RColorBrewer::brewer.pal(name = "Blues", n = 7), c("Sunday", "Monday", "Tuesday", "Wednesday", "Thursday", "Friday", "Saturday"))
  Sunday    Monday   Tuesday Wednesday  Thursday    Friday  Saturday
"#EFF3FF" "#C6DBEF" "#9ECAE1" "#6BAED6" "#4292C6" "#2171B5" "#084594"

也可以用list代替vector，

 setNames(RColorBrewer::brewer.pal(name = "Blues", n = 7), list("Sunday", "Monday", "Tuesday", "Wednesday", "Thursday", "Friday", "Saturday"))