Kali Hydra SSL issue, xHydra (GUI version of Hydra) works just fine

First find the source code.

Once located you must download it (in the case clone with git)

git clone https://github.com/vanhauser-thc/thc-hydra

then go into the directory

cd thc-hydra

then ensure you have the needed dependencies (in the README.md)

apt-get install libssl-dev libssh-dev libidn11-dev libpcre3-dev 
             libgtk2.0-dev libmysqlclient-dev libpq-dev libsvn-dev 
             firebird2.1-dev libncp-dev

Then you want to compile and install so:

apt-get purge hydra hydra-gtk #Get rid of old install
./configure --help #Get config options

Sample output

Options:
  --prefix=path              path to install hydra and its datafiles to
  --fhs                      install according to the File System Hierarchy Standard
  --with-oracle=prefix       prefix for oracle include dir
  --with-oracle-lib=prefix   prefix for oracle lib dir
  --with-ssl=prefix          prefix for SSL headers
  --with-ssl-lib=prefix      prefix for SSL libraries
  --disable-xhydra           disable compilation of hydra GUI
  --nostrip                  do not per default strip binaries before install
  --debug                    show debug output to trace errors
  --help                     this her

So therefore do ./configure #It should autodetect SSL, and you can check in the output else ./configure --with-ssl=SSL LOCATION --with-ssl-lib=SSL LIB LOCATION then make make install

This is the general way of compiling a program from source, and you should learn how these steps work for future use.