GCN code parsing

GCN code parsing
2018-07-18 20:39:11

utils.py

--- load data

def load_data(path="../data/cora/", dataset="cora"):
    """Load citation network dataset (cora only for now)"""
    print('Loading {} dataset...'.format(dataset))

    idx_features_labels = np.genfromtxt("{}{}.content".format(path, dataset),
                                        dtype=np.dtype(str))
    features = sp.csr_matrix(idx_features_labels[:, 1:-1], dtype=np.float32)
    labels = encode_onehot(idx_features_labels[:, -1])

    # build graph
    idx = np.array(idx_features_labels[:, 0], dtype=np.int32)
    idx_map = {j: i for i, j in enumerate(idx)}
    edges_unordered = np.genfromtxt("{}{}.cites".format(path, dataset),
                                    dtype=np.int32)
    edges = np.array(list(map(idx_map.get, edges_unordered.flatten())),
                     dtype=np.int32).reshape(edges_unordered.shape)
    adj = sp.coo_matrix((np.ones(edges.shape[0]), (edges[:, 0], edges[:, 1])),
                        shape=(labels.shape[0], labels.shape[0]),
                        dtype=np.float32)

    # build symmetric adjacency matrix
    adj = adj + adj.T.multiply(adj.T > adj) - adj.multiply(adj.T > adj)

    features = normalize(features)
    adj = normalize(adj + sp.eye(adj.shape[0]))

    idx_train = range(140)
    idx_val = range(200, 500)
    idx_test = range(500, 1500)

    features = torch.FloatTensor(np.array(features.todense()))
    labels = torch.LongTensor(np.where(labels)[1])
    adj = sparse_mx_to_torch_sparse_tensor(adj)

    idx_train = torch.LongTensor(idx_train)
    idx_val = torch.LongTensor(idx_val)
    idx_test = torch.LongTensor(idx_test)

    return adj, features, labels, idx_train, idx_val, idx_test

View Code

## adj: torch.size([2708, 2708])
## features: torch.Size([2708, 1433])
## labels: torch.Size([2708])
## idx_train: torch.Size([140])
## idx_val: torch.Size([300])
## idx_test: torch.Size([1000])

train.py