blast+学习之search tools

search tools:blastn, blastp, blastx, tblastx, tblastn, psiblast, rpsblast, and rpstblastn

1.blastn: 核酸序列vs核酸库

$blastn -query file-in  -db database  -out file_out  -evalue 0.00001 -max_target_seqs 5  -num_threads 4  -outfmt format "7 qacc sacc evalue length pident"

-evalue :设置E值阀值 

-max_targe_seqs :Maximum number of aligned sequences to keep. -max_target_seqs <Integer, >=1>

-num_threads 4: 线程数

-output:输出格式,7代表一种格式,后面是内容。7 = tabular with comment lines

2.blastp:

拒绝低效率勤奋,保持高效思考
原文地址:https://www.cnblogs.com/timeisbiggestboss/p/7050908.html