The program damaver averages aligned models and computes a probability map. More specifically, given a list of models in PDB format which are aligned to yield the best overlap (as a result from damsup), the program remaps those onto a grid of densely packed beads in order to compute a frequency map (by default, only CA atoms are used to compute the map). For each bead, the cross volume with proximal dummy atoms in the input models (occupancy) is computed and saved into the output file damaver.pdb in columns 56-60. This output file can be processed further by the program damfilt.For DAMMIN orGASBOR averaging, 10-15 models are recommended. Maximum number of files is 50.
Running damaver
Usage:
$> damaver [[INPUTFILE] [OPTIONS]]]